Changelog

Starting with version 2.0 will the project use semantic versioning.

[Unreleased]

Added

Fixed

Changed

[v0.2.0]

Added

  • Improved output of create_user API CLI command

  • bonsai_api create-user command have options for mail, first name and last name.

  • Open samples by clicking on labels in the similar samples card in the samples view.

  • Optional “extended” HTTP argument to sample view to view extended prediction info

Fixed

  • Fixed crash in create_user API CLI command

  • Resistance_report now render work in progress page

  • Removed old project name from GrapeTree header

  • Fixed issue that prevented node labels in GrapeTree from being displayed.

Changed

  • The role “user” have permission to comment and classify QC

  • Updated PRP to version 0.3.0

[v0.1.0]

Added

  • Find similar samples by calculating MinHash distance

  • Added async similarity searches and clustering

  • User can choose clustering method from the sample basket

  • Added spp prediction result to sample view

  • Find similar samples default to 50

  • Added STX typing for Escherichia coli samples

  • CLI command for updating tags for all samples

Fixed

  • Fixed calculation of missing and novel cgmlst alleles

  • Fixed so sample metadata is displayed in GrapeTree

Changed

  • Renamed client to frontent and server to api

  • Renamed cgvis to Bonsai

  • Complete rewrite of the project

  • Removed N novel cgmlst alleles from cgmlst qc card

  • Use data models from JASEN Pipleine Result Processing application

  • Use pre-defined table columns in edit groups view

Previous release

Starting with version 2.0, the project was renamed from cgvis to Bonsai.