0.1.0
Installation
Configuring Bonsai
Administration
Deployment into a production environment
LIMS Export — Configuration & Usage
Frequently asked questions
Developer guide
Bonsai developer documentation
Login systems
MinHash clustering
Allele clustering service
Reference
Changelog
Bonsai
Index
Index
A
|
B
|
C
|
D
|
F
|
L
|
M
|
N
|
R
|
S
|
T
|
U
|
V
A
access_token_expire_minutes (bonsai_api.config.Settings attribute)
allowed_origins (bonsai_api.config.Settings attribute)
annotations_dir (bonsai_api.config.Settings attribute)
api_authentication (bonsai_api.config.Settings attribute)
api_external_url (bonsai_app.config.Settings attribute)
api_internal_url (bonsai_app.config.Settings attribute)
audit_log_service_api (bonsai_api.config.Settings attribute)
B
bonsai_admin_mail (bonsai_api.config.Settings attribute)
bonsai_admin_password (bonsai_api.config.Settings attribute)
bonsai_admin_user (bonsai_api.config.Settings attribute)
C
cluster() (in module allele_cluster_service.tasks)
D
database_name (bonsai_api.config.Settings attribute)
db_host (bonsai_api.config.Settings attribute)
db_port (bonsai_api.config.Settings attribute)
F
force_attribute_value_as_list (bonsai_api.config.Settings attribute)
L
ldap_base_dn (bonsai_api.config.Settings attribute)
ldap_bind_dn (bonsai_api.config.Settings attribute)
ldap_ca_certs_data (bonsai_api.config.Settings attribute)
ldap_ca_certs_file (bonsai_api.config.Settings attribute)
ldap_ca_certs_path (bonsai_api.config.Settings attribute)
ldap_client_cert (bonsai_api.config.Settings attribute)
ldap_client_private_key (bonsai_api.config.Settings attribute)
ldap_connection_timeout (bonsai_api.config.Settings attribute)
ldap_host (bonsai_api.config.Settings attribute)
ldap_port (bonsai_api.config.Settings attribute)
ldap_private_key_password (bonsai_api.config.Settings attribute)
ldap_raise_exceptions (bonsai_api.config.Settings attribute)
ldap_read_only (bonsai_api.config.Settings attribute)
ldap_require_cert (bonsai_api.config.Settings attribute)
ldap_search_attr (bonsai_api.config.Settings attribute)
ldap_search_filter (bonsai_api.config.Settings attribute)
ldap_secret (bonsai_api.config.Settings attribute)
ldap_tls_version (bonsai_api.config.Settings attribute)
ldap_use_ssl (bonsai_api.config.Settings attribute)
ldap_use_tls (bonsai_api.config.Settings attribute)
ldap_user_login_attr (bonsai_api.config.Settings attribute)
ldap_valid_names (bonsai_api.config.Settings attribute)
lims_export_config (bonsai_api.config.Settings attribute)
M
max_connections (bonsai_api.config.Settings attribute)
min_connections (bonsai_api.config.Settings attribute)
mongodb_uri (bonsai_api.config.Settings property)
N
notification_service_api (bonsai_api.config.Settings attribute)
R
redis_host (bonsai_api.config.Settings attribute)
redis_port (bonsai_api.config.Settings attribute)
reference_genomes_dir (bonsai_api.config.Settings attribute)
request_timeout (bonsai_app.config.Settings attribute)
S
sample_view_cluster_method (bonsai_app.config.Settings attribute)
sample_view_similarity_limit (bonsai_app.config.Settings attribute)
sample_view_similarity_threshold (bonsai_app.config.Settings attribute)
sample_view_typing_method (bonsai_app.config.Settings attribute)
secret_key (bonsai_api.config.Settings attribute)
(bonsai_app.config.Settings attribute)
T
testing (bonsai_app.config.Settings attribute)
tz (bonsai_app.config.Settings attribute)
U
use_ldap_auth (bonsai_api.config.Settings property)
V
verify_ssl (bonsai_app.config.Settings attribute)